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Kabak, J., DeFilippi, L., Engel R. and Tropp, B., "Synthesis of the
Phosphonic Acid Isostere of Glycerol 3-Phosphate," J. Medicinal Chem. 15,
p. 1074, 1972. (Note my name is misspelled as "DeFilippe" in the
original publication... a good reason to give galley proofs to all of the
authors!)
This compound has been of interest since its structure is equivalent to glycerol 3-phosphate, except that the O in the phospho-ester linkage found in glycerol 3-phosphate (bolded in the next box),
DeFilippi, L. J. and Hultquist, D. E.,
"A Microscale Isolation of Hemins from Hemeproteins by Use of Polyacrylamide Gel
Electrophoresis," Arch. Biochem. Biophys. 170, pp. 670-675, 1975.
Dean, R. T., DeFilippi, L. J. and Hultquist, D.
E., "Esterification of Hemins with Trimethyloxonium Tetrafluoroborate," Anal.
Biochem. 76, pp. 1-8, 1976.
DeFilippi, L. J. and Hultquist D. E., "High-Pressure Liquid Chromatography and
Field Desorption Mass Spectroscopy of Heme a, Heme a Dimethyl Ester and
Acetyl Heme a Dimethyl Ester," Biochim. et Biophys. Acta 498,
pp. 395-402, 1977.
Weiss, L., Wolff, J., Knowles, F. C., DeFilippi, L. J. and Gibson, Q. H.,
"Synthesis and Characterization of N-(2,4-Diphosphobenzyl)-1-Amino-5-Naphthalenesulfonic
Acid, a New Fluorescent Analogue of Diphosphoglyceric Acid," J. Biol. Chem. 253
(7), pp. 2380-2385, 1978. DeFilippi, L. J. and Hultquist, D. E., "The Green Hemoproteins of Bovine
Erythrocytes, I. Purification and Characterization," J. Biol. Chem. 253
(9), pp. 2946-2953, 1978.
DeFilippi, L. J., Toler, L. S. and Hultquist, D. E., "Reactivities of
Hydroxylamine and Sodium Bisulfite with Carbonyl-Containing Haems and with the Prosthetic
Group of the Erythrocyte Green Haemoproteins," Biochem J. 179, pp.
151-160, 1979. Abstract and introduction as published: ABSTRACT The
reactivities of alkaline NH2OH and neutral NaHSO3 with
carbonyl and olefinic groups conjugated with the tetrapyrrole nucleus of haems
were studied. The reactions were
carried out with 2-3 nmol of haem a, spirographis haem,
isospirographis haem, 2,4-diacetyldeuterohaem and protohaem.
Vinyl side chains were found to be insensitive to the chemical action of
both alkaline NH2OH and neutral NaHSO3.
The formyl-containing haems reacted rapidly with both reagents at
room temperature, as evidenced by sizable hypsochromic shifts of the reduced
pyridine haemochrome spectrum. In less alkaline solution, the reactions of these
formyl-containing haems with NH2OH were much slower.
2,4-Diacetyldeuterohaem reacted with alkaline NH2OH, but
not with neutral NaHSO3. These
rapid, simple and straightforward tests are readily usable in differentiating
among formyl, acetyl and other electron withdrawing side chains conjugated with
the tetrapyrrole ring of haems. We
applied these observations to an investigation of the two unique prosthetic
groups of the bovine erythrocyte green haemoproteins.
The prosthetic groups of these two proteins were isolated and spectrally
characterized. Under the conditions
used, the haems did not react with either NH2OH or NaHSO3, but were altered by
dithionite, suggesting that the previous interpretation that a formyl group was
present [Hultquist, Dean & Reed (1976) J. Biol. Chem. 251, 3927-3932]
may have been premature. These
studies also provide evidence that the a
(alpha)-hydroxyfarnesylethyl side chain of haem a affects the a-band
maximum, but not the b-(beta-) or Soret bands of the reduced pyridine haemochrome spectrum of
haem a. INTRODUCTION The
reaction of NH2OH with carbonyl groups to give the corresponding
oxime derivative has classically been used as a test for the detection of
carbonyl-containing porphyrins and, less frequently, carbonyl-containing haems
(Rawlinson & Hale, 1949; Lemberg & Falk, 1951; Oliver & Rawlinson,
1955; Connelly et al., 1958; Parker, 1959; Morrison et al., 1960; Clezy &
Barrett, 1961; Clezy et al., 1964). The magnitude of the blue-shift of the
near-U.V.-visible absorption spectrum that accompanies oxime formation is much
larger for formyl-containing tetrapyrroles than for acetyl-containing
tetrapyrroles. Oxime formation results in a 17-22 nm shift of the a-peak
of the reduced pyridine haemochrome of haems with a formyl group in conjugation
with the tetrapyrrole nucleus, but gives only a 1-2 nm shift with haems
containing a conjugated acetyl group (Lemberg & Falk, 1951). This difference
has been used to distinguish between formyl and acetyl substitution on the
periphery of the porphyrin nucleus. A
blue-shift of a porphyrin spectrum on reaction with NaHSO3 has
likewise been cited as evidence for the presence of a formyl group in
conjugation with a tetrapyrrole nucleus, since the acetyl-containing porphyrins,
cryptoporphyrins p, are reported not to undergo bisulphite-adduct
formation (Clezy et al., 1964). The
unique prosthetic group of a human erythrocyte green haemoprotein (Hultquist et
al., 1976) was found to undergo reactions with NH2OH and NaHSO3
under the conditions that have been used with other haems; characterization of
this prosthetic group and its derivatives distinguished it from all other
naturally occurring prosthetic groups and suggested that it is a complex haem
containing both a formyl group and polar acetylatable functional groups.
Similarly, we have studied two bovine erythrocyte green haemoproteins and
shown that these proteins differ in terms of the spectral and chemical
properties of their prosthetic groups (DeFilippi & Hultquist, 1978a,b).
In
attempting to identify unambiguously the side chains of these haems we further
studied the reactions of NH2OH and NaHSO3 with model
compounds. We discovered that haem a,
which has been shown to possess a formyl group as one of its substituents
(Lemberg & Falk, 1951; Lemberg, 1953; Connelly et al., 1958; Caughey et al.,
1975), does not rapidly undergo oxime formation under the neutral or mildly
alkaline conditions at which the reaction was believed to occur.
However, we found that the reaction proceeds rapidly in the strongly
alkaline conditions used in pyridine haemochrome formation, a procedure that was
believed to be simply a process to assess visually the extent of the reaction.
Moreover, we realized that the reaction of formyl-containing haems with
NaHS03 has received relatively little attention in the literature
(Orii & Washio, 1977; Kitagawa et al., 1977).
Reactivity of porphyrins (but not haems) with HS03-
was apparently first described by Parker (1959) as yielding "alteration" in the
absorption spectrum of cryptoporphyrin a in dilute cold pyridine;
reference was made to unpublished work by R. Lemberg.
In
the present paper we report the reactivities of haems with alkaline NH2OH
and neutral NaHSO3. These
reactivities constitute a rapid and straightforward means of differentiating
among formyl, acetyl and other electron-withdrawing side chains of haems
and have allowed us to reexamine the question of whether a formyl group is
present on the prosthetic groups of the erythrocyte green haemoproteins. Click here for further information. See the following paper for an application of the chemistry of fluorescent hydroxylamine to proteomics studies:
DeFilippi, L. J., Ballou, D. P. and Hultquist, D. E., "Reaction of Bovine Erythrocyte Green Hemoprotein with Oxygen and Hydrogen Peroxide," J. Biol. Chem. 254 (15), pp. 6917-6923, 1979. Xu, F., DeFilippi, L. J., Ballou, D. P., and Hultquist, D. E., "Peroxide-dependent Formation and Bleaching of the Higher Oxidation States of Bovine Erythrocyte Green Hemeprotein" Arch. Biochem. Biophys. 301 (15), pp. 184-189, 1993. Turner,
R.J., Aikens, J., Royer S., DeFilippi, L. Yap, A., Holzle, D, Somers, N,
Fotheringham, I.G., “D-Amino Acid Tolerant Hosts for D-Hydantoinase Whole Cell
Biocatalysts” Engineering in Life Sciences. 4 (6), pp. 517-520,
2004. http://www3.interscience.wiley.com/cgi-bin/abstract/109746241/ABSTRACT Whole cell biocatalysts which enable the concerted use of D-hydantoinase, D-carbamoylase, and racemase enzymes are valuable for the production of D-amino acids. However, Escherichia coli host strains used for this purpose efficiently degrade D-amino acids. This work demonstrates that D-amino acid degradation occurs largely through the concerted action of D-amino acid dehydrogenase, encoded by the dadA gene, and D-serine dehydratase, encoded by the dsdA gene. Deletion mutants of E. coli which lack these activities were constructed and compared against wild type strains in D-amino acid degradation. An E. coli dadA mutant reduced the degradation of D-methionine by one third, D-phenylalanine by two-thirds, and D-2-aminobutyric acid nearly completely. Even though the dadA mutant had no effect on D-serine degradation, a dadA dsdA double mutant of E. coli additionally reduced degradation of D-serine, as well as D-phenylalanine, almost entirely. These strains are appropriate hosts for whole cell biosynthesis of D-amino acids using general approaches such as the hydantoinase system. ABSTRACTS, PROCEEDINGS AND PUBLISHED LECTURES DeFilippi, L. J. and Hultquist, D. E., "Isolation of Hemes from Hemeproteins Using Polyacrylamide Gel Electrophoresis," Federation Proceedings 34 (6), p. 602, 1975. DeFilippi, L. J. and Ballou, D., "Mechanism of Dithionite- and H2O2-Induced Bleaching of The Erythrocyte Formylhemin-Containing Protein," Federation Proceedings 35 (6), p. 1393, 1976. DeFilippi, L. J. and Gibson, Q. H., "Problems in Defining the Hemoglobin T-State," Federation Proceedings 37 (6), p. 1672, 1978. DeFilippi, L. J., "High Surface Area Immobilized Enzyme Electrode," Federation Proceedings 45 (6), p. 1945, 1986. DeFilippi, L. J. and Lupton, F. S., "Bioremediation of Soluble Cr(VI) Using Anaerobic Sulfate Reducing Bacteria," Proceedings of R&D 92 National Research & Development Conference on the Control of Hazardous Materials, San Francisco CA, pp. 138-141, February 4-6, 1992. DeFilippi, L. J. and Lupton, F. S., "Bioremediation of Hexavalent Chromium Using Marine Sulfate Reducing Bacteria" (Invited Lecture, NY/NJ Port Authority, no published abstract), May 4-5, 1992. DeFilippi, L. J. and Lupton, F. S., "Bioremediation of Chromium (VI) Contaminated Solid Residues Using Sulfate Reducing Bacteria" Emerging Technologies in Hazardous Waste Management V, American Chemical Society Division of Industrial and Engineering Chemistry Special Symposium, pp. 117-120, September 21-23, 1992, Atlanta, GA. DeFilippi, L. J., "Bioremediation of Chromium (VI) Contaminated Solid Residues Using Sulfate Reducing Bacteria" U.S. Environmental Protection Agency Forum on Innovative Hazardous Waste Treatment Technologies: Domestic and International, Nov. 17-19, 1992, San Francisco, CA DeFilippi, L. J., Sanyal, S. and Love, T. P., "Performance Improvement of a
Fixed-Film Biological Reactor by the Use of Mixed Packing Media" Emerging
Technologies in Hazardous Waste Management V, American Chemical Society Division of
Industrial and Engineering Chemistry Special Symposium, pp. 130-132, September 27-29,
1993, Atlanta, GA. DeFilippi, L. J., "Vapor Phase Biological Treatment Using Carbon Biomass Support" Applied Bioremediation 93, October 25-26, 1993, Fairfield, NJ. DeFilippi, L. J., Koch, M. B., Voellinger, C. M., Winstead, D. R. and Lupton, F. L.
"A Biological Air Treatment System Based Upon The Use of a Structured Biomass
Support" IGT Symposium on Gas, Oil and Environmental Biotechnology, November
29 - December 1, 1993, Colorado Springs, CO. Lupton, F. S., Sheridan, W. G. and DeFilippi L. J., "Combined Anaerobic In-Situ/Aerobic Ex-Situ Bioremediation of Chlorinated Ethenes Using an Immobilized Cell Bioreactor" (Presented as a poster session at the U.S. EPA sponsored Fifth Forum on Innovative Hazardous Waste Treatment Technologies: Domestic and International) May 3 to May 5, 1994, The Congress Hotel Chicago, Illinois. BOOK CHAPTERS AND BOOK DeFilippi, L. J., "Bioremediation of Hexavalent Chromium in Water, Soil and Slag Using Sulfate Reducing Bacteria" in D. L. Wise and D. J. Trantolo, eds., Remediation of Hazardous Waste Contaminated Soils, Marcel Dekker, New York, 1994. DeFilippi, L. J. and Lupton, F. L., "Introduction to Microbial Degradation of Aqueous Waste and Its Application using a Fixed -film Reactor" in G. A. Lewandowski and L. J. DeFilippi, eds., Biological Treatment of Hazardous Wastes, Wiley Interscience (John Wiley and Sons), 1998. Lewandowski, G. A. and DeFilippi, L. J., eds., Biological Treatment of Hazardous Wastes, Wiley Interscience (John Wiley and Sons), 1998. DeFilippi, L. J., " Sulfate Reducing Bacteria and Other Biological Agents for Bioremediation of Hexavalent Chromium and Other Heavy Metals" in Wise, D. L, Trantolo, D. J. and Cichon, E. J. Inyang, H. I, and U. Stottmeister, Bioremediation of Contaminated Soils, Environmental Science and Pollution Series, Marcel Dekker, New York, 2000.
Figure from Bioremediation of Contaminated Soils. Schematized and simple plot of organism health vs. relative concentration of metal, both in arbitrary units. The scales and units are relative and may have logarithmic character. The curve in the rear of the Figure represents a non-essential, but potentially toxic metal.
PATENTS DeFilippi, L. J., "Process for Preparing Immobilized Enzymes", U.S. Patent
4,229,536 (1980). DeFilippi, L. J., "Magnetic Support Matrix for Enzyme Immobilization", U.S.
Patent 4,343,901 (1982). Malloy, T. P. and DeFilippi, L. J., "Surface Modified Electrodes", U.S. Patent 4,581,336 (1986). Calcaterra, L. T., DeFilippi, L. J., Childs M. E. and Latos, E. J., "Antimicrobial Fabrics Using Graft Copolymers", U.S. Patent 4,810,567 (1989). Lupton, F. S., DeFilippi, L. J., and Goodman, J. R., "Bioremediation of Chromium (VI) Contaminated Aqueous Systems by Sulfate Reducing Bacteria", U.S. Patent 5,062,956 (1991). Lupton, F. S., DeFilippi, L. J., and Goodman, J. R., "Bioremediation of Chromium (VI) Contaminated Solid Residues", U.S. Patent 5,155,042 (1992). Sanyal, S., Love, T. P., and DeFilippi, L. J., "Process and Apparatus for Removal of Organic Pollutants from Waste Water", U.S. Patent 5,217,616 (1993). DeFilippi, L. J., Lupton, F. S. and Mashayekhi, M., "Process for Biological Remediation of Vaporous Pollutants", U.S. Patent 5,413,714 (1994). DeFilippi, L. J., Lupton, F. S. and Mashayekhi, M., "Apparatus for Biological Remediation of Vaporous Pollutants", U.S. Patent 5,503,738 (1996). The patent abstract reads: This invention relates to a process for remediating vaporous pollutants which comprises passing a vaporous stream containing one or more of pollutants through a bioreactor, the bioreactor comprising a plurality of biologically active bodies, the biologically active body comprising a macroporous substrate and one or more of microorganisms capable of remediating one or more of said pollutants, wherein the substrate is fabricated from a decomposition-resistant material. The present invention further provides an apparatus for this process. DeFilippi, L. J., "Support Containing Particulate Adsorbent and Microorganisms for Removal of Pollutants", U.S. Patent 5,580,770 (1996). The patent abstract reads: A biologically active support for removing pollutants from a fluid stream such as waste water is prepared. The support is formed of a polymeric foam substrate coated with a composition containing a particulate adsorbent which adsorbs, then releases pollutants, and a polymeric binder that binds the adsorbent to the surface of the substrate. The binder contains a suspension aid, and one or more pollutant-degrading microorganisms are adhered to the surface of the coated support. The binder preferably has a T.sub.g of lower than or equal to about 250 degree C and may be a latex. Examples of suspension aids are surfactants and polyanionic polypeptides such as ammonium caseinate. The adsorbent is preferably a carbon material such as coal, charcoal, carbon black and activated carbon. Other adsorbents are silica gel, active clays, zeolites, hydrophobic and ion exchange resins, and molecular sieves. To remove pollutants, the biologically active support is placed in a reactor and a fluid stream containing a pollutant such as phenol is passed through the reactor where the pollutant is degraded by the microorganism and adsorbed to the adsorbent. The adsorbent acts as a buffer by adsorbing excess pollutant from solution when the pollutant concentration increases and when the pollutant concentration decreases releases pollutant into solution where the microorganism degrades the pollutant. DeFilippi, L. J. and Lupton, F. S. "Biologically Active Support Containing Bound Adsorbent Particles and Microorganisms for Waste Stream Purification", U.S. Patent 6,395,522 (2002). Joseph A. Laszlo, David L. Compton, Louis J. DeFilippi, Steven Grall "Methods of making compositions comprising a UV-absorbing chromophore" USPTO Applicaton #: 20070077636 - Class: 435134000 (USPTO). The present disclosure relates generally to compositions comprising UV-absorbing chromophores such as phytochemicals and methods of production of same. More specifically, the present disclosure relates to fat soluble compositions comprising feruloylated vegetable oils and methods for the acylation of polyols. Joseph A. Laszlo, David L. Compton, Louis J. DeFilippi, Steven Grall "Compositions comprising a UV-absorbing chromophore" USPTO Applicaton #: 20070077214 - Class: 424059000. Disclosed herein is a chemical composition comprising a linker agent and a compound comprising at least one UV-absorbing chromophore Louis J. DeFilippi, Steven G. Grall, James F. Kinney, Joseph A. Laszio, David L. Compton "Formulations with feruloyl glycerides and methods of preparation" USPTO Applicaton #: 20080050321 - Class: 424059000
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